Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli; x__Campylobacter coli CVM 41957
NCBI Strain Identifiers CVM 41957
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.49%
CheckM Strain Heterogeneity 33.33
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 54
N50 Contigs 118,941 bp
Longest Contig 250,016 bp
Scaffold Count 53
N50 Scaffolds 118,941 bp
Longest Scaffold 250,016 bp
Genome Size 1,714,143 bp
Protein Count 1,782
Coding Density 93.57%
GC Percentage 31.37%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Campylobacter coli CVM 41957 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02887125
Country USA
Date 2015-10-29
Genbank Assembly Accession GCA_001419355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 1,743
Refseq Category na
Seq Rel Date 2015/10/29
Spanned Gaps 1
Species Taxid 195
SSU Count 1
Submitter FDA/CVM
Taxid 1440024
Total Gap Length 25
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAJZ00000000.1