Campylobacter_D jejuni
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni; x__Campylobacter jejuni CVM 41902
NCBI Strain Identifiers CVM 41902
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 94.77%
CheckM Contamination 2.28%
CheckM Strain Heterogeneity 55.56
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 510
N50 Contigs 5,665 bp
Longest Contig 32,286 bp
Scaffold Count 509
N50 Scaffolds 5,665 bp
Longest Scaffold 32,286 bp
Genome Size 1,648,567 bp
Protein Count 2,060
Coding Density 93.52%
GC Percentage 30.73%
Ambiguous Bases 9
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Campylobacter jejuni CVM 41902 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02887129
Country USA
Date 2015-10-29
Genbank Assembly Accession GCA_001418855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 1,973
Refseq Category na
Seq Rel Date 2015/10/29
Spanned Gaps 1
Species Taxid 197
SSU Count 1
Submitter FDA/CVM
Taxid 1440038
Total Gap Length 27
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAKD00000000.1