Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Dickeya; s__Dickeya solani
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya solani
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya solani
NCBI Strain Identifiers PPO 9134
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001644705.1)
Genome Characteristics
CheckM Completeness 99.99%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 0
23S Count 1
tRNA Count 18
Contig Count 25
N50 Contigs 485,873 bp
Longest Contig 1,553,748 bp
Scaffold Count 22
N50 Scaffolds 485,873 bp
Longest Scaffold 1,553,748 bp
Genome Size 4,870,830 bp
Protein Count 4,153
Coding Density 86.46%
GC Percentage 56.24%
Ambiguous Bases 4
GTDB representative GCA_001644705.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Dsl_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03266542
Country Netherlands
Date 2015-10-28
Genbank Assembly Accession GCA_001417915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,199
Refseq Category na
Seq Rel Date 2015/10/28
Spanned Gaps 3
Species Taxid 1089444
SSU Count 0
Submitter CNRS - UPR2355
Taxid 1089444
Total Gap Length 183
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JWLT00000000.1