Leptospira interrogans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans; x__Leptospira interrogans serovar Canicola
NCBI Strain Identifiers LO-3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900156205.1)
Genome Characteristics
CheckM Completeness 96.47%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 319
N50 Contigs 24,740 bp
Longest Contig 124,756 bp
Scaffold Count 319
N50 Scaffolds 24,740 bp
Longest Scaffold 124,756 bp
Genome Size 4,696,320 bp
Protein Count 3,925
Coding Density 76.42%
GC Percentage 35.13%
Ambiguous Bases 634
GTDB representative GCA_900156205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM141758v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03783263
Country Brazil: Parana
Date 2015-10-26
Genbank Assembly Accession GCA_001417585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source liver
Latitude Longitude None
Molecule Count N/A
CDS Count 4,315
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 0
Species Taxid 173
SSU Count 1
Submitter School of Veterinary Medicine and Animal Science / University of Sao Paulo
Taxid 211880
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIHE00000000.1