Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers CVM N50039F
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 40.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 88
N50 Contigs 120,773 bp
Longest Contig 275,333 bp
Scaffold Count 88
N50 Scaffolds 120,773 bp
Longest Scaffold 275,333 bp
Genome Size 1,741,042 bp
Protein Count 1,844
Coding Density 93.65%
GC Percentage 31.35%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM141741v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03344575
Country USA
Date 2015-10-27
Genbank Assembly Accession GCA_001417415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Cecal Young Chicken
Latitude Longitude None
Molecule Count N/A
CDS Count 1,797
Refseq Category na
Seq Rel Date 2015/10/27
Spanned Gaps 0
Species Taxid 195
SSU Count 1
Submitter FDA
Taxid 195
Total Gap Length 0
Translation Table 11
tRNA Count (total) 32
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LBDP00000000.1