Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers CVM N44505F
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.34%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 66.67
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 65
N50 Contigs 137,543 bp
Longest Contig 350,453 bp
Scaffold Count 65
N50 Scaffolds 137,543 bp
Longest Scaffold 350,453 bp
Genome Size 1,717,883 bp
Protein Count 1,792
Coding Density 93.71%
GC Percentage 31.27%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM141736v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03344567
Country USA
Date 2015-10-27
Genbank Assembly Accession GCA_001417365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Cecal Heifer
Latitude Longitude None
Molecule Count N/A
CDS Count 1,757
Refseq Category na
Seq Rel Date 2015/10/27
Spanned Gaps 0
Species Taxid 195
SSU Count 1
Submitter FDA
Taxid 195
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LBDX00000000.1