Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers 14650
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 82
N50 Contigs 417,833 bp
Longest Contig 668,429 bp
Scaffold Count 11
N50 Scaffolds 3,376,426 bp
Longest Scaffold 3,376,426 bp
Genome Size 6,367,531 bp
Protein Count 5,808
Coding Density 89.67%
GC Percentage 66.55%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141408v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04128839
Country Canada:Alberta
Date 2015-10-26
Genbank Assembly Accession GCA_001414085.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 51.04139389812642 N 114.06002259374952 W
Molecule Count N/A
CDS Count 5,960
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 71
Species Taxid 287
SSU Count 2
Submitter Oklahoma State Universtiy
Taxid 287
Total Gap Length 5619
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKPT00000000.1