Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers RU1 BHI8
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.42%
CheckM Strain Heterogeneity 25.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 17
Contig Count 387
N50 Contigs 43,078 bp
Longest Contig 225,296 bp
Scaffold Count 384
N50 Scaffolds 43,078 bp
Longest Scaffold 225,296 bp
Genome Size 4,697,915 bp
Protein Count 4,608
Coding Density 88.15%
GC Percentage 50.90%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141380v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872784
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001413805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU1 evolved under selective conditions; BHI evolved gen 950 Population GS
Latitude Longitude None
Molecule Count N/A
CDS Count 4,944
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 3
Species Taxid 562
SSU Count 4
Submitter US Army Edgewood Chemical Biological Center
Taxid 562
Total Gap Length 30
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRSO00000000.1