Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers RU1 BHI3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 5
23S Count 4
tRNA Count 19
Contig Count 349
N50 Contigs 98,550 bp
Longest Contig 290,144 bp
Scaffold Count 288
N50 Scaffolds 2,068,316 bp
Longest Scaffold 2,084,745 bp
Genome Size 4,718,990 bp
Protein Count 4,595
Coding Density 87.86%
GC Percentage 50.91%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141374v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872779
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001413745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU1 evolved under selective conditions; BHI evolved gen 950 Population GS
Latitude Longitude None
Molecule Count N/A
CDS Count 4,925
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 61
Species Taxid 562
SSU Count 7
Submitter US Army Edgewood Chemical Biological Center
Taxid 562
Total Gap Length 2937
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRSJ00000000.1