Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers RU1 MA10
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 16.67
5S Count 4
16S Count 6
23S Count 5
tRNA Count 20
Contig Count 376
N50 Contigs 68,416 bp
Longest Contig 216,398 bp
Scaffold Count 256
N50 Scaffolds 3,264,174 bp
Longest Scaffold 3,264,174 bp
Genome Size 4,725,491 bp
Protein Count 4,607
Coding Density 87.75%
GC Percentage 50.92%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141348v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872750
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001413485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU1 evolved under selective conditions; Mutation accumulation gen 5900 LB GS
Latitude Longitude None
Molecule Count N/A
CDS Count 4,949
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 120
Species Taxid 562
SSU Count 8
Submitter US Army Edgewood Chemical Biological Center
Taxid 562
Total Gap Length 1340
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRRS00000000.1