Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers RU1 MA4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 5
23S Count 3
tRNA Count 20
Contig Count 328
N50 Contigs 78,503 bp
Longest Contig 264,651 bp
Scaffold Count 74
N50 Scaffolds 1,515,177 bp
Longest Scaffold 1,863,341 bp
Genome Size 4,736,944 bp
Protein Count 4,572
Coding Density 87.88%
GC Percentage 50.93%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141341v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872744
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001413415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU1 evolved under selective conditions; Mutation accumulation gen 5900 LB GS
Latitude Longitude None
Molecule Count N/A
CDS Count 4,945
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 254
Species Taxid 562
SSU Count 6
Submitter US Army Edgewood Chemical Biological Center
Taxid 562
Total Gap Length 2540
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRRM00000000.1