Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter freundii
NCBI Strain Identifiers RU2 BHI19
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900635425.1)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 1.17%
CheckM Strain Heterogeneity 17.65
5S Count 0
16S Count 3
23S Count 3
tRNA Count 16
Contig Count 148
N50 Contigs 103,007 bp
Longest Contig 282,234 bp
Scaffold Count 145
N50 Scaffolds 103,007 bp
Longest Scaffold 282,234 bp
Genome Size 5,254,567 bp
Protein Count 5,079
Coding Density 88.61%
GC Percentage 51.52%
Ambiguous Bases N/A
GTDB representative GCA_900635425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141329v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872795
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001413295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU2 evolved under selective conditions; BHI evolved gen 950 Population GS
Latitude Longitude None
Molecule Count N/A
CDS Count 5,228
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 3
Species Taxid 546
SSU Count 4
Submitter US Army Edgewood Chemical Biological Center
Taxid 546
Total Gap Length 30
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRTM00000000.1