Citrobacter freundii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter freundii
NCBI Strain Identifiers RU2 LB35
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900635425.1)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 1.07%
CheckM Strain Heterogeneity 11.11
5S Count 6
16S Count 9
23S Count 8
tRNA Count 20
Contig Count 139
N50 Contigs 153,028 bp
Longest Contig 380,090 bp
Scaffold Count 63
N50 Scaffolds 5,041,510 bp
Longest Scaffold 5,041,510 bp
Genome Size 5,293,366 bp
Protein Count 5,063
Coding Density 88.07%
GC Percentage 51.53%
Ambiguous Bases N/A
GTDB representative GCA_900635425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141319v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872775
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001413195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU2 evolved under selective conditions; LB evolved gen 500 Population GS
Latitude Longitude None
Molecule Count N/A
CDS Count 5,231
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 76
Species Taxid 546
SSU Count 10
Submitter US Army Edgewood Chemical Biological Center
Taxid 546
Total Gap Length 760
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRTE00000000.1