Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers RU1 LB5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 6
23S Count 5
tRNA Count 20
Contig Count 311
N50 Contigs 78,866 bp
Longest Contig 275,421 bp
Scaffold Count 124
N50 Scaffolds 3,066,128 bp
Longest Scaffold 3,066,128 bp
Genome Size 4,741,442 bp
Protein Count 4,560
Coding Density 87.70%
GC Percentage 50.93%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141297v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872757
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001412975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU1 evolved under selective conditions; LB evolved gen 500 Population GS
Latitude Longitude None
Molecule Count N/A
CDS Count 4,920
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 187
Species Taxid 562
SSU Count 8
Submitter US Army Edgewood Chemical Biological Center
Taxid 562
Total Gap Length 3708
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRRZ00000000.1