Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers RU1 LB1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 16.67
5S Count 0
16S Count 2
23S Count 1
tRNA Count 17
Contig Count 365
N50 Contigs 52,783 bp
Longest Contig 199,280 bp
Scaffold Count 359
N50 Scaffolds 53,200 bp
Longest Scaffold 199,280 bp
Genome Size 4,693,548 bp
Protein Count 4,582
Coding Density 88.15%
GC Percentage 50.91%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141292v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872753
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001412925.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU1 evolved under selective conditions; LB evolved gen 500 Population GS
Latitude Longitude None
Molecule Count N/A
CDS Count 4,924
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 6
Species Taxid 562
SSU Count 3
Submitter US Army Edgewood Chemical Biological Center
Taxid 562
Total Gap Length 60
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRRV00000000.1