Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers RU1 MA6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 1.04%
CheckM Strain Heterogeneity 57.14
5S Count 0
16S Count 2
23S Count 1
tRNA Count 16
Contig Count 528
N50 Contigs 23,494 bp
Longest Contig 100,974 bp
Scaffold Count 528
N50 Scaffolds 23,494 bp
Longest Scaffold 100,974 bp
Genome Size 4,692,554 bp
Protein Count 4,707
Coding Density 88.14%
GC Percentage 50.91%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM141289v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872746
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001412895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU1 evolved under selective conditions; Mutation accumulation gen 5900 LB GS
Latitude Longitude None
Molecule Count N/A
CDS Count 5,025
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter US Army Edgewood Chemical Biological Center
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRRO00000000.1