Citrobacter freundii
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter freundii
NCBI Strain Identifiers RU2 BHI16
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900635425.1)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 1.14%
CheckM Strain Heterogeneity 22.22
5S Count 1
16S Count 3
23S Count 2
tRNA Count 16
Contig Count 148
N50 Contigs 107,622 bp
Longest Contig 274,223 bp
Scaffold Count 147
N50 Scaffolds 107,622 bp
Longest Scaffold 274,223 bp
Genome Size 5,254,784 bp
Protein Count 5,078
Coding Density 88.58%
GC Percentage 51.52%
Ambiguous Bases N/A
GTDB representative GCA_900635425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141281v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872792
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001412815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU2 evolved under selective conditions; BHI evolved gen 950 Population GS
Latitude Longitude None
Molecule Count N/A
CDS Count 5,227
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 1
Species Taxid 546
SSU Count 3
Submitter US Army Edgewood Chemical Biological Center
Taxid 546
Total Gap Length 10
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRTJ00000000.1