Citrobacter freundii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter freundii
NCBI Strain Identifiers RU2 BHI14
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900635425.1)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 1.02%
CheckM Strain Heterogeneity 12.5
5S Count 5
16S Count 7
23S Count 6
tRNA Count 20
Contig Count 96
N50 Contigs 211,525 bp
Longest Contig 585,130 bp
Scaffold Count 55
N50 Scaffolds 5,101,306 bp
Longest Scaffold 5,101,306 bp
Genome Size 5,285,303 bp
Protein Count 5,060
Coding Density 88.24%
GC Percentage 51.53%
Ambiguous Bases N/A
GTDB representative GCA_900635425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141279v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02872790
Country USA: Houston; TX
Date 2015-10-26
Genbank Assembly Accession GCA_001412795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source parent strain RU2 evolved under selective conditions; BHI evolved gen 950 Population GS
Latitude Longitude None
Molecule Count N/A
CDS Count 5,215
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 41
Species Taxid 546
SSU Count 8
Submitter US Army Edgewood Chemical Biological Center
Taxid 546
Total Gap Length 1090
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRTH00000000.1