Streptococcus halitosis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus halitosis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus oralis
NCBI Strain Identifiers 89a
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003143695.2)
Genome Characteristics
CheckM Completeness 99.83%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 24
N50 Contigs 190,692 bp
Longest Contig 424,661 bp
Scaffold Count 21
N50 Scaffolds 190,692 bp
Longest Scaffold 424,661 bp
Genome Size 1,928,943 bp
Protein Count 1,844
Coding Density 90.32%
GC Percentage 41.27%
Ambiguous Bases 4
GTDB representative GCA_003143695.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM141148v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04123206
Country Sweden: Umea
Date 2015-10-22
Genbank Assembly Accession GCA_001411485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source throat from healthy child
Latitude Longitude 63.825 N 20.263900000000035 E
Molecule Count N/A
CDS Count 1,872
Refseq Category na
Seq Rel Date 2015/10/22
Spanned Gaps 3
Species Taxid 1303
SSU Count 1
Submitter The University of Queensland
Taxid 1303
Total Gap Length 69
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKPC00000000.1