Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Weltevreden
NCBI Strain Identifiers 2511STDY5564066
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.51%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 77
N50 Contigs 149,123 bp
Longest Contig 406,793 bp
Scaffold Count 76
N50 Scaffolds 149,123 bp
Longest Scaffold 406,793 bp
Genome Size 5,045,168 bp
Protein Count 4,787
Coding Density 87.66%
GC Percentage 52.12%
Ambiguous Bases 11
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 10900_1#32
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2149665
Country None
Date 2015-10-21
Genbank Assembly Accession GCA_001410475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Rat
Latitude Longitude None
Molecule Count N/A
CDS Count 5,079
Refseq Category na
Seq Rel Date 2015/10/21
Spanned Gaps 1
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 57743
Total Gap Length 25
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZOM00000000.1