Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Weltevreden
NCBI Strain Identifiers 2511STDY5712410
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 85
N50 Contigs 114,499 bp
Longest Contig 388,044 bp
Scaffold Count 66
N50 Scaffolds 195,247 bp
Longest Scaffold 388,044 bp
Genome Size 5,098,879 bp
Protein Count 4,846
Coding Density 87.41%
GC Percentage 52.03%
Ambiguous Bases 3
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12227_3#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2336257
Country None
Date 2015-10-21
Genbank Assembly Accession GCA_001410315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human Stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,169
Refseq Category na
Seq Rel Date 2015/10/21
Spanned Gaps 19
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 57743
Total Gap Length 4709
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZLO00000000.1