Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Weltevreden
NCBI Strain Identifiers 2511STDY5712389
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 85
N50 Contigs 133,280 bp
Longest Contig 334,800 bp
Scaffold Count 62
N50 Scaffolds 172,717 bp
Longest Scaffold 365,335 bp
Genome Size 5,005,467 bp
Protein Count 4,772
Coding Density 87.32%
GC Percentage 52.15%
Ambiguous Bases 3
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12216_4#47
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2336236
Country None
Date 2015-10-21
Genbank Assembly Accession GCA_001409995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human Stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,093
Refseq Category na
Seq Rel Date 2015/10/21
Spanned Gaps 23
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 57743
Total Gap Length 6068
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZNS00000000.1