Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Weltevreden
NCBI Strain Identifiers 2511STDY5712408
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 110
N50 Contigs 129,879 bp
Longest Contig 405,183 bp
Scaffold Count 69
N50 Scaffolds 175,809 bp
Longest Scaffold 405,183 bp
Genome Size 5,044,894 bp
Protein Count 4,763
Coding Density 86.83%
GC Percentage 52.11%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12227_3#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2336255
Country None
Date 2015-10-21
Genbank Assembly Accession GCA_001409975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human Stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,068
Refseq Category na
Seq Rel Date 2015/10/21
Spanned Gaps 41
Species Taxid 28901
SSU Count 3
Submitter SC
Taxid 57743
Total Gap Length 11125
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZNB00000000.1