Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Weltevreden
NCBI Strain Identifiers 2511STDY5712455
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 109
N50 Contigs 128,599 bp
Longest Contig 352,417 bp
Scaffold Count 76
N50 Scaffolds 149,111 bp
Longest Scaffold 406,509 bp
Genome Size 5,048,359 bp
Protein Count 4,789
Coding Density 87.11%
GC Percentage 52.09%
Ambiguous Bases 6
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12227_3#51
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2336302
Country None
Date 2015-10-21
Genbank Assembly Accession GCA_001409755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Seafood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,101
Refseq Category na
Seq Rel Date 2015/10/21
Spanned Gaps 33
Species Taxid 28901
SSU Count 3
Submitter SC
Taxid 57743
Total Gap Length 8982
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZMX00000000.1