Campylobacter_D jejuni
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers Campylobacter jejuni;MEAT
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 98.39%
CheckM Contamination 0.92%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 188
N50 Contigs 16,000 bp
Longest Contig 83,713 bp
Scaffold Count 71
N50 Scaffolds 45,200 bp
Longest Scaffold 103,834 bp
Genome Size 1,592,069 bp
Protein Count 1,701
Coding Density 93.50%
GC Percentage 30.53%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 56_S54
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3556558
Country None
Date 2015-10-11
Genbank Assembly Accession GCA_001408075.1
Genome Category Isolate
Genome Representation full
Isolate MEAT
Isolation Source Madrid
Latitude Longitude 40.43 N 3.7 W
Molecule Count N/A
CDS Count 1,655
Refseq Category na
Seq Rel Date 2015/10/11
Spanned Gaps 117
Species Taxid 197
SSU Count 1
Submitter LSHTM
Taxid 197
Total Gap Length 3369
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZJJ00000000.1