Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers Campylobacter jejuni;NECK SKIN
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.31%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 92
N50 Contigs 62,559 bp
Longest Contig 198,468 bp
Scaffold Count 80
N50 Scaffolds 80,481 bp
Longest Scaffold 198,468 bp
Genome Size 1,769,764 bp
Protein Count 1,882
Coding Density 93.61%
GC Percentage 31.27%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 22_S21
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3556526
Country None
Date 2015-10-11
Genbank Assembly Accession GCA_001408035.1
Genome Category Isolate
Genome Representation full
Isolate NECK SKIN
Isolation Source Madrid
Latitude Longitude 40.43 N 3.7 W
Molecule Count N/A
CDS Count 1,847
Refseq Category na
Seq Rel Date 2015/10/11
Spanned Gaps 12
Species Taxid 197
SSU Count 1
Submitter LSHTM
Taxid 197
Total Gap Length 193
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZJB00000000.1