Campylobacter_D jejuni
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers Campylobacter jejuni;NECK SKIN
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 99.4%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 61
N50 Contigs 64,352 bp
Longest Contig 284,351 bp
Scaffold Count 45
N50 Scaffolds 76,304 bp
Longest Scaffold 299,638 bp
Genome Size 1,654,296 bp
Protein Count 1,737
Coding Density 94.06%
GC Percentage 30.44%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 42_S40
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3556545
Country None
Date 2015-10-11
Genbank Assembly Accession GCA_001407855.1
Genome Category Isolate
Genome Representation full
Isolate NECK SKIN
Isolation Source Madrid
Latitude Longitude 40.43 N 3.7 W
Molecule Count N/A
CDS Count 1,724
Refseq Category na
Seq Rel Date 2015/10/11
Spanned Gaps 16
Species Taxid 197
SSU Count 1
Submitter LSHTM
Taxid 197
Total Gap Length 353
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZIC00000000.1