Campylobacter_D jejuni
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers WATER;Campylobacter jejuni
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 77
N50 Contigs 50,754 bp
Longest Contig 117,190 bp
Scaffold Count 66
N50 Scaffolds 53,234 bp
Longest Scaffold 117,190 bp
Genome Size 1,606,345 bp
Protein Count 1,698
Coding Density 94.13%
GC Percentage 30.42%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 63_S61
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3556565
Country None
Date 2015-10-11
Genbank Assembly Accession GCA_001407715.1
Genome Category Isolate
Genome Representation full
Isolate WATER
Isolation Source Madrid
Latitude Longitude 40.43 N 3.7 W
Molecule Count N/A
CDS Count 1,662
Refseq Category na
Seq Rel Date 2015/10/11
Spanned Gaps 11
Species Taxid 197
SSU Count 1
Submitter LSHTM
Taxid 197
Total Gap Length 137
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZJL00000000.1