Campylobacter_D jejuni
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers Campylobacter jejuni;NECK SKIN
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 162
N50 Contigs 22,826 bp
Longest Contig 78,464 bp
Scaffold Count 93
N50 Scaffolds 43,467 bp
Longest Scaffold 99,555 bp
Genome Size 1,719,159 bp
Protein Count 1,869
Coding Density 93.84%
GC Percentage 30.29%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 7_S6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3556510
Country None
Date 2015-10-11
Genbank Assembly Accession GCA_001407345.1
Genome Category Isolate
Genome Representation full
Isolate NECK SKIN
Isolation Source Madrid
Latitude Longitude 40.43 N 3.7 W
Molecule Count N/A
CDS Count 1,819
Refseq Category na
Seq Rel Date 2015/10/11
Spanned Gaps 69
Species Taxid 197
SSU Count 1
Submitter LSHTM
Taxid 197
Total Gap Length 1000
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZIL00000000.1