Campylobacter_D jejuni
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers Campylobacter jejuni;NECK SKIN
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 98.62%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 335
N50 Contigs 12,803 bp
Longest Contig 46,249 bp
Scaffold Count 310
N50 Scaffolds 14,336 bp
Longest Scaffold 51,296 bp
Genome Size 1,659,131 bp
Protein Count 1,905
Coding Density 94.06%
GC Percentage 30.69%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 38_S48
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3556541
Country None
Date 2015-10-11
Genbank Assembly Accession GCA_001406975.1
Genome Category Isolate
Genome Representation full
Isolate NECK SKIN
Isolation Source Madrid
Latitude Longitude 40.43 N 3.7 W
Molecule Count N/A
CDS Count 1,826
Refseq Category na
Seq Rel Date 2015/10/11
Spanned Gaps 25
Species Taxid 197
SSU Count 1
Submitter LSHTM
Taxid 197
Total Gap Length 291
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZIY00000000.1