Campylobacter_D jejuni
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers Campylobacter jejuni;FAECES
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 99.17%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 192
N50 Contigs 18,661 bp
Longest Contig 61,344 bp
Scaffold Count 88
N50 Scaffolds 54,615 bp
Longest Scaffold 159,909 bp
Genome Size 1,635,512 bp
Protein Count 1,769
Coding Density 93.73%
GC Percentage 30.37%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 43_S41
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3556546
Country None
Date 2015-10-11
Genbank Assembly Accession GCA_001406895.1
Genome Category Isolate
Genome Representation full
Isolate FAECES
Isolation Source Madrid
Latitude Longitude 40.43 N 3.7 W
Molecule Count N/A
CDS Count 1,710
Refseq Category na
Seq Rel Date 2015/10/11
Spanned Gaps 104
Species Taxid 197
SSU Count 1
Submitter LSHTM
Taxid 197
Total Gap Length 2412
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CZIS00000000.1