Pseudanabaena sp001402795
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Pseudanabaenales; f__Pseudanabaenaceae; g__Pseudanabaena; s__Pseudanabaena sp001402795
Filtered NCBI Taxonomy d__Bacteria; p__Cyanobacteria; c__; o__Synechococcales; f__Pseudanabaenaceae; g__Pseudanabaena; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; x__Cyanobacteria/Melainabacteria group; p__Cyanobacteria; o__Synechococcales; f__Pseudanabaenaceae; g__Pseudanabaena; s__Pseudanabaena sp. 'Roaring Creek'
NCBI Strain Identifiers Roaring Creek
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.06%
CheckM Contamination 1.06%
CheckM Strain Heterogeneity 18.18
5S Count 0
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 770
N50 Contigs 11,174 bp
Longest Contig 66,577 bp
Scaffold Count 770
N50 Scaffolds 11,174 bp
Longest Scaffold 66,577 bp
Genome Size 5,477,812 bp
Protein Count 5,084
Coding Density 81.99%
GC Percentage 43.33%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM140279v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03854406
Country USA: PA; Roaring Creek Reservoir
Date 2015-10-22
Genbank Assembly Accession GCA_001402795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source freshwater
Latitude Longitude None
Molecule Count N/A
CDS Count 4,894
Refseq Category na
Seq Rel Date 2015/10/22
Spanned Gaps 0
Species Taxid 1681830
SSU Count 1
Submitter Bucknell University
Taxid 1681830
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIRE00000000.1