Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers YB7A09
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 51
N50 Contigs 339,557 bp
Longest Contig 577,920 bp
Scaffold Count 49
N50 Scaffolds 339,557 bp
Longest Scaffold 577,920 bp
Genome Size 3,885,495 bp
Protein Count 3,378
Coding Density 87.94%
GC Percentage 47.67%
Ambiguous Bases 24
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM140259v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03488022
Country USA: Oyster Pond; MA
Date 2015-10-22
Genbank Assembly Accession GCA_001402595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pond water
Latitude Longitude 41.541417 N 70.638889 W
Molecule Count N/A
CDS Count 3,529
Refseq Category na
Seq Rel Date 2015/10/22
Spanned Gaps 2
Species Taxid 666
SSU Count 1
Submitter University of Alberta
Taxid 666
Total Gap Length 95
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LBGM00000000.1