Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers YB2A05
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 54
N50 Contigs 276,850 bp
Longest Contig 521,506 bp
Scaffold Count 52
N50 Scaffolds 276,850 bp
Longest Scaffold 521,506 bp
Genome Size 3,886,789 bp
Protein Count 3,388
Coding Density 87.96%
GC Percentage 47.67%
Ambiguous Bases 12
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM140253v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03488006
Country USA: Oyster Pond; MA
Date 2015-10-22
Genbank Assembly Accession GCA_001402535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pond water
Latitude Longitude 41.541417 N 70.638889 W
Molecule Count N/A
CDS Count 3,537
Refseq Category na
Seq Rel Date 2015/10/22
Spanned Gaps 2
Species Taxid 666
SSU Count 1
Submitter University of Alberta
Taxid 666
Total Gap Length 40
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LBFW00000000.1