Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers YB3G04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 69
N50 Contigs 319,299 bp
Longest Contig 757,887 bp
Scaffold Count 68
N50 Scaffolds 319,299 bp
Longest Scaffold 757,887 bp
Genome Size 4,031,104 bp
Protein Count 3,602
Coding Density 87.29%
GC Percentage 47.39%
Ambiguous Bases 27
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM140227v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03488012
Country USA: Oyster Pond; MA
Date 2015-10-22
Genbank Assembly Accession GCA_001402275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pond water
Latitude Longitude 41.541417 N 70.638889 W
Molecule Count N/A
CDS Count 3,790
Refseq Category na
Seq Rel Date 2015/10/22
Spanned Gaps 1
Species Taxid 666
SSU Count 1
Submitter University of Alberta
Taxid 666
Total Gap Length 11
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LBGC00000000.1