Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers YB4F05
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 52
N50 Contigs 301,244 bp
Longest Contig 521,506 bp
Scaffold Count 50
N50 Scaffolds 301,244 bp
Longest Scaffold 521,506 bp
Genome Size 3,886,413 bp
Protein Count 3,384
Coding Density 87.94%
GC Percentage 47.67%
Ambiguous Bases 10
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM140226v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03488015
Country USA: Oyster Pond; MA
Date 2015-10-22
Genbank Assembly Accession GCA_001402265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pond water
Latitude Longitude 41.541417 N 70.638889 W
Molecule Count N/A
CDS Count 3,536
Refseq Category na
Seq Rel Date 2015/10/22
Spanned Gaps 2
Species Taxid 666
SSU Count 1
Submitter University of Alberta
Taxid 666
Total Gap Length 56
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LBGF00000000.1