Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas citri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; x__Xanthomonas citri group; s__Xanthomonas citri; x__Xanthomonas citri pv. fuscans
NCBI Strain Identifiers LMG 826
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 98.91%
CheckM Contamination 2.2%
CheckM Strain Heterogeneity 77.78
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 1,314
N50 Contigs 8,953 bp
Longest Contig 43,820 bp
Scaffold Count 1,314
N50 Scaffolds 8,953 bp
Longest Scaffold 43,820 bp
Genome Size 4,857,009 bp
Protein Count 4,932
Coding Density 85.85%
GC Percentage 64.94%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Xff_LMG826
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02903172
Country Belgium: Merelbeke
Date 2015-10-21
Genbank Assembly Accession GCA_001401605.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,999
Refseq Category na
Seq Rel Date 2015/10/21
Spanned Gaps 0
Species Taxid 346
SSU Count 1
Submitter Institute for Agricultural and Fisheries Research (ILVO)
Taxid 366649
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master JPYF00000000.1