Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas syringae group genomosp. 3; x__Pseudomonas syringae pv. berberidis
NCBI Strain Identifiers ICMP4116
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 16.67
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 392
N50 Contigs 49,176 bp
Longest Contig 235,525 bp
Scaffold Count 341
N50 Scaffolds 55,970 bp
Longest Scaffold 235,525 bp
Genome Size 6,263,211 bp
Protein Count 5,751
Coding Density 87.89%
GC Percentage 58.46%
Ambiguous Bases 124
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PbbICMP4116
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976296
Country New Zealand: Otara
Date 2015-10-20
Genbank Assembly Accession GCA_001401405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,929
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 51
Species Taxid 251701
SSU Count 1
Submitter University of Toronto
Taxid 251704
Total Gap Length 1326
Translation Table 11
tRNA Count (total) 53
Type Material assembly from pathotype material
Unspanned Gaps 0
Version Status latest
WGS Master LJPU00000000.1