Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas savastanoi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas savastanoi; x__Pseudomonas savastanoi pv. savastanoi
NCBI Strain Identifiers ICMP4352
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 335
N50 Contigs 54,579 bp
Longest Contig 206,343 bp
Scaffold Count 321
N50 Scaffolds 55,596 bp
Longest Scaffold 206,343 bp
Genome Size 6,023,336 bp
Protein Count 5,704
Coding Density 87.94%
GC Percentage 57.99%
Ambiguous Bases 71
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PsvICMP4352
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976268
Country Yugoslavia
Date 2015-10-20
Genbank Assembly Accession GCA_001401285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,792
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 14
Species Taxid 29438
SSU Count 1
Submitter University of Toronto
Taxid 360920
Total Gap Length 305
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LJRJ00000000.1