Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas syringae group genomosp. 3; x__Pseudomonas syringae pv. tomato
NCBI Strain Identifiers ICMP2844
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 355
N50 Contigs 43,854 bp
Longest Contig 138,824 bp
Scaffold Count 344
N50 Scaffolds 45,004 bp
Longest Scaffold 138,824 bp
Genome Size 6,261,430 bp
Protein Count 5,752
Coding Density 87.88%
GC Percentage 58.48%
Ambiguous Bases 80
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PtoICMP2844
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976246
Country United Kingdom: Guernsey; Channel Islands
Date 2015-10-20
Genbank Assembly Accession GCA_001401135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,953
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 11
Species Taxid 251701
SSU Count 1
Submitter University of Toronto
Taxid 323
Total Gap Length 331
Translation Table 11
tRNA Count (total) 55
Type Material assembly from pathotype material
Unspanned Gaps 0
Version Status latest
WGS Master LJRN00000000.1