Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. spinaceae
NCBI Strain Identifiers ICMP16929
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 93.53%
CheckM Contamination 2.95%
CheckM Strain Heterogeneity 45.83
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,676
N50 Contigs 6,193 bp
Longest Contig 30,590 bp
Scaffold Count 1,657
N50 Scaffolds 6,205 bp
Longest Scaffold 30,590 bp
Genome Size 6,038,703 bp
Protein Count 6,957
Coding Density 87.24%
GC Percentage 58.30%
Ambiguous Bases 105
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PspICMP16929
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976304
Country Japan
Date 2015-10-20
Genbank Assembly Accession GCA_001401065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,877
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 19
Species Taxid 317
SSU Count 1
Submitter University of Toronto
Taxid 264459
Total Gap Length 627
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJRI00000000.1