Pseudomonas_E syringae_M
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae_M
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. solidagae
NCBI Strain Identifiers ICMP16925
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002905995.1)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 701
N50 Contigs 17,598 bp
Longest Contig 109,008 bp
Scaffold Count 382
N50 Scaffolds 37,373 bp
Longest Scaffold 120,482 bp
Genome Size 5,980,445 bp
Protein Count 5,486
Coding Density 88.06%
GC Percentage 59.17%
Ambiguous Bases 1,478
GTDB representative GCA_002905995.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PsoICMP16925
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976256
Country Japan
Date 2015-10-20
Genbank Assembly Accession GCA_001401055.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,470
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 319
Species Taxid 317
SSU Count 1
Submitter University of Toronto
Taxid 264458
Total Gap Length 9570
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJRH00000000.1