Pseudomonas_E cerasi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E cerasi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. papulans
NCBI Strain Identifiers ICMP4048
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900074915.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.92%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 427
N50 Contigs 37,753 bp
Longest Contig 205,017 bp
Scaffold Count 298
N50 Scaffolds 67,036 bp
Longest Scaffold 367,852 bp
Genome Size 6,097,472 bp
Protein Count 5,682
Coding Density 87.76%
GC Percentage 58.88%
Ambiguous Bases 469
GTDB representative GCA_900074915.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PppICMP4048
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976275
Country Canada: Ontario
Date 2015-10-20
Genbank Assembly Accession GCA_001401005.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,737
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 129
Species Taxid 317
SSU Count 1
Submitter University of Toronto
Taxid 83963
Total Gap Length 4035
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJRB00000000.1