Pseudomonas_E caricapapayae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E caricapapayae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas syringae group genomosp. 7; x__Pseudomonas syringae pv. helianthi
NCBI Strain Identifiers ICMP4531
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400735.1)
Genome Characteristics
CheckM Completeness 99.95%
CheckM Contamination 0.84%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 286
N50 Contigs 54,333 bp
Longest Contig 205,915 bp
Scaffold Count 277
N50 Scaffolds 54,333 bp
Longest Scaffold 205,915 bp
Genome Size 6,208,545 bp
Protein Count 5,849
Coding Density 88.35%
GC Percentage 58.06%
Ambiguous Bases 55
GTDB representative GCA_001400735.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PheICMP4531
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976278
Country Mexico
Date 2015-10-20
Genbank Assembly Accession GCA_001400835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,918
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 9
Species Taxid 251699
SSU Count 1
Submitter University of Toronto
Taxid 251654
Total Gap Length 197
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LJQM00000000.1