| GTDB Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali |
|---|---|
| Filtered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas ficuserectae |
| Unfiltered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas ficuserectae |
| NCBI Strain Identifiers | ICMP7848 |
| GTDB Type Material Designation | type strain of species |
| GTDB Representative of Species | True (209 genomes in species cluster) |
| CheckM Completeness | 98.81% |
|---|---|
| CheckM Contamination | 0.5% |
| CheckM Strain Heterogeneity | 66.67 |
| 5S Count | 1 |
| 16S Count | 1 |
| 23S Count | 1 |
| tRNA Count | 19 |
| Contig Count | 1,115 |
| N50 Contigs | 9,076 bp |
| Longest Contig | 48,840 bp |
| Scaffold Count | 624 |
| N50 Scaffolds | 18,060 bp |
| Longest Scaffold | 92,007 bp |
| Genome Size | 5,655,086 bp |
| Protein Count | 5,591 |
| Coding Density | 88.05% |
| GC Percentage | 57.89% |
| Ambiguous Bases | 1,371 |
| GTDB representative of species | True |
| Assembly Level | Scaffold |
|---|---|
| Assembly Name | PfiICMP7848 |
| Assembly Type | n/a |
| Bioproject | PRJNA224116 |
| Biosample | SAMN03976279 |
| Country | None |
| Date | 2015-10-20 |
| Genbank Assembly Accession | GCA_001400815.1 |
| Genome Category | Isolate |
| Genome Representation | full |
| Isolate | None |
| Isolation Source | None |
| Latitude Longitude | None |
| Molecule Count | N/A |
| CDS Count | 5,462 |
| Refseq Category | na |
| Seq Rel Date | 2015/10/20 |
| Spanned Gaps | 491 |
| Species Taxid | 53410 |
| SSU Count | 1 |
| Submitter | University of Toronto |
| Taxid | 53410 |
| Total Gap Length | 12614 |
| Translation Table | 11 |
| tRNA Count (total) | 31 |
| Type Material | assembly from type material |
| Unspanned Gaps | 0 |
| Version Status | latest |
| WGS Master | LJQJ00000000.1 |