GTDB Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali |
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Filtered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas ficuserectae |
Unfiltered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas ficuserectae |
NCBI Strain Identifiers | ICMP7848 |
GTDB Type Material Designation | type strain of species |
GTDB Representative of Species | True (209 genomes in species cluster) |
CheckM Completeness | 98.81% |
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CheckM Contamination | 0.5% |
CheckM Strain Heterogeneity | 66.67 |
5S Count | 1 |
16S Count | 1 |
23S Count | 1 |
tRNA Count | 19 |
Contig Count | 1,115 |
N50 Contigs | 9,076 bp |
Longest Contig | 48,840 bp |
Scaffold Count | 624 |
N50 Scaffolds | 18,060 bp |
Longest Scaffold | 92,007 bp |
Genome Size | 5,655,086 bp |
Protein Count | 5,591 |
Coding Density | 88.05% |
GC Percentage | 57.89% |
Ambiguous Bases | 1,371 |
GTDB representative of species | True |
Assembly Level | Scaffold |
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Assembly Name | PfiICMP7848 |
Assembly Type | n/a |
Bioproject | PRJNA224116 |
Biosample | SAMN03976279 |
Country | None |
Date | 2015-10-20 |
Genbank Assembly Accession | GCA_001400815.1 |
Genome Category | Isolate |
Genome Representation | full |
Isolate | None |
Isolation Source | None |
Latitude Longitude | None |
Molecule Count | N/A |
CDS Count | 5,462 |
Refseq Category | na |
Seq Rel Date | 2015/10/20 |
Spanned Gaps | 491 |
Species Taxid | 53410 |
SSU Count | 1 |
Submitter | University of Toronto |
Taxid | 53410 |
Total Gap Length | 12614 |
Translation Table | 11 |
tRNA Count (total) | 31 |
Type Material | assembly from type material |
Unspanned Gaps | 0 |
Version Status | latest |
WGS Master | LJQJ00000000.1 |