Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 19 tRNAs
Genome Characteristics
CheckM Completeness 98.81%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 66.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 1,115
N50 Contigs 9,076 bp
Longest Contig 48,840 bp
Scaffold Count 624
N50 Scaffolds 18,060 bp
Longest Scaffold 92,007 bp
Genome Size 5,655,086 bp
Protein Count 5,591
Coding Density 88.05%
GC Percentage 57.89%
Ambiguous Bases 1,371
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name PfiICMP7848
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976279
Country None
Date 2015-10-20
Genbank Assembly Accession GCA_001400815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,462
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 491
Species Taxid 53410
SSU Count 1
Submitter University of Toronto
Taxid 53410
Total Gap Length 12614
Translation Table 11
tRNA Count (total) 31
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LJQJ00000000.1