Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. cunninghamiae
NCBI Strain Identifiers ICMP11894
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 579
N50 Contigs 20,952 bp
Longest Contig 85,794 bp
Scaffold Count 389
N50 Scaffolds 35,340 bp
Longest Scaffold 117,896 bp
Genome Size 5,782,633 bp
Protein Count 5,470
Coding Density 88.43%
GC Percentage 58.19%
Ambiguous Bases 1,211
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PcuICMP11894
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976284
Country China: Jiangxi; Fujian
Date 2015-10-20
Genbank Assembly Accession GCA_001400795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,387
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 190
Species Taxid 317
SSU Count 1
Submitter University of Toronto
Taxid 264454
Total Gap Length 5820
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJQE00000000.1