Pseudomonas_E amygdali
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas amygdali
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas amygdali; x__Pseudomonas amygdali pv. ciccaronei
NCBI Strain Identifiers ICMP5710
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.35%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 578
N50 Contigs 31,247 bp
Longest Contig 187,228 bp
Scaffold Count 496
N50 Scaffolds 39,582 bp
Longest Scaffold 253,615 bp
Genome Size 5,757,421 bp
Protein Count 5,548
Coding Density 88.05%
GC Percentage 58.18%
Ambiguous Bases 253
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PccICMP5710
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976288
Country Italy
Date 2015-10-20
Genbank Assembly Accession GCA_001400755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,519
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 82
Species Taxid 47877
SSU Count 1
Submitter University of Toronto
Taxid 264452
Total Gap Length 3697
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJPY00000000.1