Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. broussonetiae
NCBI Strain Identifiers ICMP13650
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.72%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 934
N50 Contigs 17,601 bp
Longest Contig 75,070 bp
Scaffold Count 623
N50 Scaffolds 26,642 bp
Longest Scaffold 84,352 bp
Genome Size 5,801,974 bp
Protein Count 5,674
Coding Density 87.75%
GC Percentage 57.88%
Ambiguous Bases 945
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PbrICMP13650
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976292
Country Japan: Aoya; Tottori
Date 2015-10-20
Genbank Assembly Accession GCA_001400715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,617
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 311
Species Taxid 317
SSU Count 1
Submitter University of Toronto
Taxid 129136
Total Gap Length 10534
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJPV00000000.1