Pseudomonas_E syringae_M
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae_M
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. aceris
NCBI Strain Identifiers ICMP2802
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002905995.1)
Genome Characteristics
CheckM Completeness 98.85%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 37.5
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 685
N50 Contigs 21,044 bp
Longest Contig 91,749 bp
Scaffold Count 684
N50 Scaffolds 21,561 bp
Longest Scaffold 91,749 bp
Genome Size 6,300,961 bp
Protein Count 5,978
Coding Density 88.26%
GC Percentage 59.14%
Ambiguous Bases 44
GTDB representative GCA_002905995.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PacICMP2802
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976301
Country USA: California
Date 2015-10-20
Genbank Assembly Accession GCA_001400655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,070
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 1
Species Taxid 317
SSU Count 1
Submitter University of Toronto
Taxid 199198
Total Gap Length 10
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJPM00000000.1