Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas amygdali
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas amygdali; x__Pseudomonas amygdali pv. dendropanacis
NCBI Strain Identifiers ICMP9150
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.46%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 524
N50 Contigs 22,534 bp
Longest Contig 76,779 bp
Scaffold Count 373
N50 Scaffolds 33,960 bp
Longest Scaffold 115,462 bp
Genome Size 5,666,765 bp
Protein Count 5,360
Coding Density 88.21%
GC Percentage 58.14%
Ambiguous Bases 546
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PdeICMP9150
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976281
Country Japan: Okinawa Prefecture
Date 2015-10-20
Genbank Assembly Accession GCA_001400435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,298
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 151
Species Taxid 47877
SSU Count 1
Submitter University of Toronto
Taxid 235272
Total Gap Length 4003
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJQG00000000.1